>YuniToumei: adding auto short description template since this infobox generates them now

2024-12-23T22:09:00Z

adding auto short description template since this infobox generates them now

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{{Documentation subpage}}
{{High-use}}
{{Auto short description}}


This is template for a protein family/domain as defined in biological databases such as [[Pfam]].

== Usage ==
To use this template, copy the following text and paste it at the top of your article. Fill in as many fields as possible, but don't worry if some information is missing.

<syntaxhighlight lang="wikitext">
{{Infobox protein family
| class = 
| Symbol =
| Name =
| image =
| caption =
| Pfam =
| Pfam_clan =
| ECOD =
| InterPro =
| SMART =
| PROSITE =
| MEROPS =
| CATH =
| SCOP =
| TCDB =
| OPM family = 
| OPM protein =
| CAZy =
| CDD =
| Membranome superfamily = 
| Membranome family =
}}
</syntaxhighlight>

== Examples ==
The following filled in Pfam infobox template produces the information box to the right.
{{Infobox protein family
| Symbol = Hormone_recep
| class = collapsible
| Name = Ligand-binding domain (LBD)
| image = RORC_3L0L.png
| caption = [[RAR-related orphan receptor gamma|RORγ]] ({{PDB|3L0L}})
| Pfam = PF00104
| ECOD = 188.1.1.1
| InterPro = IPR000536
| SMART = SM00430
| PROSITE =
| SCOP = 1lbd
| CATH = 1lbd
| TCDB =
| OPM family =
| OPM protein =
| CDD = cd06157
}}

<syntaxhighlight lang="wikitext">
{{Infobox protein family
| Symbol = Hormone_recep
| class = collapsible
| Name = Ligand-binding domain (LBD)
| image = RORC_3L0L.png
| caption = [[RAR-related orphan receptor gamma|RORγ]] ({{PDB|3L0L}})
| Pfam = PF00104
| ECOD = 188.1.1.1
| InterPro = IPR000536
| SMART = SM00430
| PROSITE =
| SCOP = 1lbd
| CATH = 1lbd
| TCDB =
| OPM family =
| OPM protein =
| CDD = cd06157
}}
</syntaxhighlight>

==Maintenance==
* [[:Category:Protein pages needing a picture]]

== TemplateData==
{{TemplateData header}}
<templatedata>{
"description": "This is template for a protein family/domain as defined in biological databases such as Pfam.",
"params": {
"Symbol": {
"label": "Symbol",
"type": "line",
"required": false
},
"Name": {
"label": "Name",
"type": "line",
"required": false
},
"image": {
"label": "Image",
"type": "wiki-file-name",
"required": false,
"description": "fill in \"NONE\" if not needed to suppress the tracking category"
},
"width": {
"label": "Width",
"description": "Width for image",
"type": "string",
"required": false
},
"caption": {
"label": "Caption",
"description": "Caption for image",
"type": "string",
"required": false
},
"Pfam": {
"label": "Pfam family identifier",
"description": "Auto-links to Pfam family record",
"type": "line",
"required": false
},
"Pfam_clan": {
"label": "Pfam clan identifier",
"description": "Auto-links to Pfam clan record; a clan is a group of related families (~superfamily).",
"type": "line",
"required": false
},
"Interpro": {
"label": "Interpro identifier",
"description": "Auto-links to an Interpro entry",
"type": "line",
"required": false
},
"SMART": {
"label": "SMART accession number",
"description": "Auto-links to a domain entry in the Simple Modular Architecture Research Tool",
"type": "line",
"required": false
},
"PROSITE": {
"label": "PROSITE record identifier",
"description": "Auto-links to a PROSITE record search",
"type": "line",
"required": false
},
"MEROPS": {
"label": "MEROPS record identifier",
"description": "Auto-links to a MEROPS record (MEROPS is scoped to peptidases and their inhibitors)",
"type": "line",
"required": false
},
"SCOP": {
"label": "SCOP (domain/PDB accession number)",
"description": "Given a PDB accession number or SCOP domain name, auto-links to a SCOP and a SUPFAMpage.",
"type": "line",
"required": false
},
"CATH": {
"label": "CATH (domain/PDB accession number)",
"description": "Given a CATH domain ID or a PDB accession number, auto-links to CATH (Classification of Protein Structural Domains).",
"type": "line",
"required": false
},
"TCDB": {
"label": "TCDB identifier",
"description": "Auto-links to an identifier search in the Transporter Classification Database",
"type": "line",
"required": false
},
"OPM family": {
"label": "OPM superfamily identifier",
"description": "Auto-links to a superfamily record in the database of Orientations of Proteins in Membranes.",
"type": "line",
"required": false
},
"OPM protein": {
"label": "OPM protein identifier",
"description": "Value will typically be a PDB identifier; auto-links to a protein record in the database of Orientations of Proteins in Membranes",
"type": "line",
"required": false
},
"CAZy": {
"label": "CAZy family identifier",
"description": "Auto-links to a family description page in the database of Carbohydrate-Active enZYmes.",
"type": "line",
"required": false
},
"CDD": {
"label": "CDD uid",
"description": "Auto-links to a record in the Conserved Domain Database",
"type": "line",
"required": false
},
"align": {},
"image_size": {},
"alt": {},
"InterPro": {
"label": "InterPro family identifier"
},
"Membranome superfamily": {},
"Membranome family": {},
"class": {
"description": "infobox class",
"example": "mw-collapsible mw-collapsed"
},
"below": {
"description": "footnotes"
},
"PDB": {
"description": "PDB examples. Only use if all of: no image is available, no CATH/SCOP examples, InterPro or PDB search fails.",
"type": "content",
"deprecated": true
},
"SCOP2": {
"label": "SCOP2 override",
"description": "SCOP and SCOP2 use different domain nomenclature. Use this value if a domain is specified for SCOP.",
"example": "8029676"
},
"ECOD": {
"label": "ECOD identifier",
"description": "Auto-links to the ECOD database",
"type": "line"
}
},
"paramOrder": [
"Symbol",
"Name",
"image",
"width",
"caption",
"InterPro",
"Pfam",
"Pfam_clan",
"ECOD",
"Interpro",
"SMART",
"PROSITE",
"MEROPS",
"SCOP",
"SCOP2",
"CATH",
"TCDB",
"OPM family",
"OPM protein",
"CAZy",
"CDD",
"align",
"image_size",
"alt",
"Membranome superfamily",
"Membranome family",
"class",
"below",
"PDB"
]
}</templatedata>

<includeonly>{{Sandbox other||

[[Category:Biology infobox templates|Protein Family]]
}}</includeonly>

Template:Infobox protein family/doc - Revision history

>YuniToumei: adding auto short description template since this infobox generates them now